Toll-like receptor 9 polymorphisms in brazilian patients with systemic lupus erythematosus: a pilot study / Polimorfismos do receptor toll-like 9 em pacientes brasileiros com lúpus eritematoso sistêmico: um estudo piloto

Toll-like receptor 9 (TLR9) is an important component of the innate immune system and have been associated with several autoimmune diseases, such as Systemic Lupus Erythematosus (SLE). The aim of this study was to investigate polymorphisms in TLR9 gene in a Brazilian SLE patients group and their association with clinical manifestation, particularly Jaccoud’s arthropathy (JA). We analyzed DNA samples from 204 SLE patients, having a subgroup of them presenting JA (n=24). A control group (n=133) from the same city was also included. TLR9 single nucleotide polymorphisms (SNPs) (−1237 C>T and +2848 G>A) were identified by sequencing analysis. The TLR9 gene genotype frequency was similar both in SLE patients and the control group. In the whole SLE population, an association between the homozygosis of allele C at position −1237 with psychosis and anemia (p < 0.01) was found. Likewise, the homozygosis of allele G at position +2848 was associated with a discoid rash (p < 0.05). There was no association between JA and TLR9 polymorphisms. These data show that TLR9 polymorphisms do not seem to be a predisposing factor for SLE in the Brazilian population, and that SNPs are not associated with JA.

O receptor Toll-like 9 (TLR9) é um componente importante do sistema imunológico inato e tem sido associado a várias doenças autoimunes, como o Lúpus Eritematoso Sistêmico (LES). O objetivo deste estudo foi investigar polimorfismos no gene TLR9 em um grupo de pacientes brasileiros com LES e sua associação com a manifestação clínica, particularmente a artropatia de Jaccoud (JA). Foram analisadas amostras de DNA de 204 pacientes com LES, e um subgrupo com JA (n=24). Um grupo de controle (n=133) da mesma cidade também foi incluído. Os polimorfismos de nucleotídeos únicos TLR9 (SNPs) (−1237 C>T e +2848 G>A) foram identificados pela análise de sequenciamento. A frequência do genótipo genético TLR9 foi semelhante tanto em pacientes com LES quanto no grupo controle. Em toda a população de LES, foi encontrada associação entre a homozigose do alelo C na posição −1237 com psicose e anemia (p < 0,01). Da mesma forma, a homozigose do alelo G na posição +2848 foi associada a uma erupção cutânea discoide (p < 0,05). Não houve associação entre polimorfismos JA e TLR9. Esses dados mostram que os polimorfismos TLR9 não parecem ser um fator predisponível para o LES na população brasileira, e que os SNPs não estão associados ao JA.

Toll-like receptor 9 polymorphisms in brazilian patients with systemic lupus erythematosus: a pilot study

Abstract Toll-like receptor 9 (TLR9) is an important component of the innate immune system and have been associated with several autoimmune diseases, such as Systemic Lupus Erythematosus (SLE). The aim of this study was to investigate polymorphisms in TLR9 gene in a Brazilian SLE patients group and their association with clinical manifestation, particularly Jaccouds arthropathy (JA). We analyzed DNA samples from 204 SLE patients, having a subgroup of them presenting JA (n=24). A control group (n=133) from the same city was also included. TLR9 single nucleotide polymorphisms (SNPs) (1237 C>T and +2848 G>A) were identified by sequencing analysis. The TLR9 gene genotype frequency was similar both in SLE patients and the control group. In the whole SLE population, an association between the homozygosis of allele C at position 1237 with psychosis and anemia (p 0.01) was found. Likewise, the homozygosis of allele G at position +2848 was associated with a discoid rash (p 0.05). There was no association between JA and TLR9 polymorphisms. These data show that TLR9 polymorphisms do not seem to be a predisposing factor for SLE in the Brazilian population, and that SNPs are not associated with JA.

Resumo O receptor Toll-like 9 (TLR9) é um componente importante do sistema imunológico inato e tem sido associado a várias doenças autoimunes, como o Lúpus Eritematoso Sistêmico (LES). O objetivo deste estudo foi investigar polimorfismos no gene TLR9 em um grupo de pacientes brasileiros com LES e sua associação com a manifestação clínica, particularmente a artropatia de Jaccoud (JA). Foram analisadas amostras de DNA de 204 pacientes com LES, e um subgrupo com JA (n=24). Um grupo de controle (n=133) da mesma cidade também foi incluído. Os polimorfismos de nucleotídeos únicos TLR9 (SNPs) (1237 C>T e +2848 G>A) foram identificados pela análise de sequenciamento. A frequência do genótipo genético TLR9 foi semelhante tanto em pacientes com LES quanto no grupo controle. Em toda a população de LES, foi encontrada associação entre a homozigose do alelo C na posição 1237 com psicose e anemia (p 0,01). Da mesma forma, a homozigose do alelo G na posição +2848 foi associada a uma erupção cutânea discoide (p 0,05). Não houve associação entre polimorfismos JA e TLR9. Esses dados mostram que os polimorfismos TLR9 não parecem ser um fator predisponível para o LES na população brasileira, e que os SNPs não estão associados ao JA.

Toll-like receptor 9 polymorphisms in brazilian patients with systemic lupus erythematosus: a pilot study / Polimorfismos do receptor toll-like 9 em pacientes brasileiros com lúpus eritematoso sistêmico: um estudo piloto

Abstract Toll-like receptor 9 (TLR9) is an important component of the innate immune system and have been associated with several autoimmune diseases, such as Systemic Lupus Erythematosus (SLE). The aim of this study was to investigate polymorphisms in TLR9 gene in a Brazilian SLE patients group and their association with clinical manifestation, particularly Jaccoud's arthropathy (JA). We analyzed DNA samples from 204 SLE patients, having a subgroup of them presenting JA (n=24). A control group (n=133) from the same city was also included. TLR9 single nucleotide polymorphisms (SNPs) (−1237 C>T and +2848 G>A) were identified by sequencing analysis. The TLR9 gene genotype frequency was similar both in SLE patients and the control group. In the whole SLE population, an association between the homozygosis of allele C at position −1237 with psychosis and anemia (p < 0.01) was found. Likewise, the homozygosis of allele G at position +2848 was associated with a discoid rash (p < 0.05). There was no association between JA and TLR9 polymorphisms. These data show that TLR9 polymorphisms do not seem to be a predisposing factor for SLE in the Brazilian population, and that SNPs are not associated with JA.

Resumo O receptor Toll-like 9 (TLR9) é um componente importante do sistema imunológico inato e tem sido associado a várias doenças autoimunes, como o Lúpus Eritematoso Sistêmico (LES). O objetivo deste estudo foi investigar polimorfismos no gene TLR9 em um grupo de pacientes brasileiros com LES e sua associação com a manifestação clínica, particularmente a artropatia de Jaccoud (JA). Foram analisadas amostras de DNA de 204 pacientes com LES, e um subgrupo com JA (n=24). Um grupo de controle (n=133) da mesma cidade também foi incluído. Os polimorfismos de nucleotídeos únicos TLR9 (SNPs) (−1237 C>T e +2848 G>A) foram identificados pela análise de sequenciamento. A frequência do genótipo genético TLR9 foi semelhante tanto em pacientes com LES quanto no grupo controle. Em toda a população de LES, foi encontrada associação entre a homozigose do alelo C na posição −1237 com psicose e anemia (p < 0,01). Da mesma forma, a homozigose do alelo G na posição +2848 foi associada a uma erupção cutânea discoide (p < 0,05). Não houve associação entre polimorfismos JA e TLR9. Esses dados mostram que os polimorfismos TLR9 não parecem ser um fator predisponível para o LES na população brasileira, e que os SNPs não estão associados ao JA.

Microbial source tracking and antimicrobial resistance in one river system of a rural community in Bahia, Brazil / Rastreamento de fontes microbianas e resistência antimicrobiana em um sistema fluvial de uma comunidade rural da Bahia, Brasil

Use of antibiotics inevitably leads to antimicrobial resistance. Selection for resistance occurs primarily within the gut of humans and animals as well as in the environment through natural resistance and residual antibiotics in streams and soil. We evaluated antimicrobial resistance in Gram negative bacteria from a river system in a rural community in Bahia, Brazil. Water was collected from the Jiquiriçá and Brejões rivers and the piped water supply. Additionally, stools were collected from a random sample of residents, cows, pigs and horses near the river. The samples were screened for bacteria resistant to ciprofloxacin, cefotaxime, and meropenem and identified biochemically at the genus and species levels. Microbial source tracking demonstrated that ruminant and human fecal contamination increased as the rivers neared the village center and decreased after the last residence. Antibiotic bacteria were identified from all samples (n = 32). No bacteria were resistant to carbapenems, but the majority of the enterobacteria were resistant to ciprofloxacin, even though this class of antibiotics is not commonly used in food animals in this region. Considering these facts, together with the pattern of human fecal contamination, a human source was considered most likely for these resistant isolates.

O uso de antibióticos inevitavelmente leva à resistência antimicrobiana. A seleção para resistência antimicrobiana ocorre principalmente no intestino de seres humanos e animais, bem como no meio ambiente, através da resistência natural e resíduos de antibióticos nos esgotos e no solo. Avaliamos a resistência antimicrobiana em bactérias Gram-negativas de um sistema fluvial em uma comunidade rural da Bahia, Brasil. A água foi coletada nos rios Jiquiriçá e Brejões e no abastecimento de água encanada. Além disso, foram coletadas amostras randomizadas de fezes de moradores, vacas, porcos e cavalos próximos ao rio. As amostras foram triadas para bactérias resistentes à ciprofloxacina, cefotaxima e meropenem e identificadas bioquimicamente nos níveis de gênero e espécie. O rastreamento de fontes microbianas demonstrou que a contaminação fecal de ruminantes e humanos aumentou à medida que os rios se aproximavam do centro da vila e diminuía após a última residência. Bactérias resistentes a antibióticos foram identificadas em todas as amostras (n = 32). Nenhuma bactéria demonstrou ser resistente aos carbapenêmicos testados, contudo, foi encontrado enterobactérias resistentes à ciprofloxacina, ainda que essa classe de antibióticos não seja comumente usada na medicina veterinária dos animais dessa região. Considerando esses fatos, juntamente com o padrão de contaminação fecal avaliado, a fonte de contaminação humana foi considerada a mais provável na interação desses isolados resistentes.

Microbial source tracking and antimicrobial resistance in one river system of a rural community in Bahia, Brazil

Abstract Use of antibiotics inevitably leads to antimicrobial resistance. Selection for resistance occurs primarily within the gut of humans and animals as well as in the environment through natural resistance and residual antibiotics in streams and soil. We evaluated antimicrobial resistance in Gram negative bacteria from a river system in a rural community in Bahia, Brazil. Water was collected from the Jiquiriçá and Brejões rivers and the piped water supply. Additionally, stools were collected from a random sample of residents, cows, pigs and horses near the river. The samples were screened for bacteria resistant to ciprofloxacin, cefotaxime, and meropenem and identified biochemically at the genus and species levels. Microbial source tracking demonstrated that ruminant and human fecal contamination increased as the rivers neared the village center and decreased after the last residence. Antibiotic bacteria were identified from all samples (n = 32). No bacteria were resistant to carbapenems, but the majority of the enterobacteria were resistant to ciprofloxacin, even though this class of antibiotics is not commonly used in food animals in this region. Considering these facts, together with the pattern of human fecal contamination, a human source was considered most likely for these resistant isolates.

Resumo O uso de antibióticos inevitavelmente leva à resistência antimicrobiana. A seleção para resistência antimicrobiana ocorre principalmente no intestino de seres humanos e animais, bem como no meio ambiente, através da resistência natural e resíduos de antibióticos nos esgotos e no solo. Avaliamos a resistência antimicrobiana em bactérias Gram-negativas de um sistema fluvial em uma comunidade rural da Bahia, Brasil. A água foi coletada nos rios Jiquiriçá e Brejões e no abastecimento de água encanada. Além disso, foram coletadas amostras randomizadas de fezes de moradores, vacas, porcos e cavalos próximos ao rio. As amostras foram triadas para bactérias resistentes à ciprofloxacina, cefotaxima e meropenem e identificadas bioquimicamente nos níveis de gênero e espécie. O rastreamento de fontes microbianas demonstrou que a contaminação fecal de ruminantes e humanos aumentou à medida que os rios se aproximavam do centro da vila e diminuía após a última residência. Bactérias resistentes a antibióticos foram identificadas em todas as amostras (n = 32). Nenhuma bactéria demonstrou ser resistente aos carbapenêmicos testados, contudo, foi encontrado enterobactérias resistentes à ciprofloxacina, ainda que essa classe de antibióticos não seja comumente usada na medicina veterinária dos animais dessa região. Considerando esses fatos, juntamente com o padrão de contaminação fecal avaliado, a fonte de contaminação humana foi considerada a mais provável na interação desses isolados resistentes.

Seed-dispersing bird assemblages in riparian environments of a partially urbanized river basin, Southeastern Brazil / Assembleias de aves dispersoras de sementes em ambientes ripários de uma bacia hidrográfica parcialmente urbanizada, no sudoeste brasileiro

Abstract Birds play a key role in ecosystem dynamics, including urban and rural areas, bringing environmental quality improvements and ecological stability. Species contribute directly to natural regeneration of vegetation and succession processes, by offering ecosystem services as seed dispersal, an important role in human-modified areas. We studied the assemblages of fruit-eating birds in riparian environments of Monjolinho basin, central São Paulo state, southeastern Brazil. Birds were recorded in 41 points distributed in riparian ecosystems alongside waterbodies, in landscapes with five types of surrounding matrices: urban, periurban, farmland, and native vegetation. We described how assemblages are structured aiming to evaluate the possible influence of seasonality and landscape type. We recorded 39 bird species that can play a role as seed-dispersers, 32 in wet season and 32 in dry season. There were no significant differences in the diversity and dominance of species between seasons considering the entire area, indicating stability of basic assemblage structure. However, total number of individuals of all species recorded in different landscapes were influenced by seasonality. Also, the composition and abundance of species significantly changed between seasons, leading to a high dissimilarity with almost 50% of the species contributing with almost 90% of the observed variation. A higher taxonomic diversity and distinctness pointed to a wider array of possible seed dispersal services in natural areas, while the lowest values of indexes were found in human-modified areas. The higher number of non-related bird species during dry season contrasted with the higher number of individuals during wet season, indicating that there is more possible ecosystem services offered by frugivorous birds in driest period of the year, while in the rainy period the carrying capacity of the riparian environments was increased.

Resumo As aves desempenham um papel chave na dinâmica dos ecossistemas, incluindo áreas urbanas e rurais, e trazem melhorias na qualidade ambiental e estabilidade ecológica. As espécies contribuem diretamente com a regeneração natural da vegetação e processos de sucessão por oferecerem serviços ecossistêmicos como a dispersão de sementes, um papel fundamental em áreas alteradas. Nós estudamos a assembleia de espécies de aves que se alimentam de frutos em ambientes ripários da bacia do rio Monjolinho, região central do estado de São Paulo, sudeste do Brasil. As aves foram registradas em 41 pontos distribuídos em ecossistemas ripários ao longo dos corpos d'água, em paisagens com quatro tipos de matrizes em seu entorno: urbana, periurbana, rural e vegetação nativa. Nós descrevemos como as assembleias estão estruturadas, objetivando avaliar a possível influência da sazonalidade e do tipo de paisagem do entorno. Foram registradas 39 espécies de aves que podem desempenhar o papel de dispersoras de sementes, sendo 32 espécies no período chuvoso e 32 no período seco. Não foi detectada diferença significativa na diversidade e dominância de espécies entre estações em toda área de estudo, indicando estabilidade da estrutura básica das assembleias. Entretanto, o número total de indivíduos de todas as espécies registrados nas diferentes paisagens foi influenciado pela sazonalidade. Além disso, a composição e abundância de espécies mudou significativamente entre as estações, levando a uma alta dissimilaridade com quase 50% das espécies contribuindo com quase 90% da variação observada. A diversidade e distinção taxonômicas mais altas apontam para maior variedade de serviços ecossistêmicos possíveis relacionados à dispersão de sementes em áreas naturais, enquanto os menores valores desses índices foram encontrados em áreas antropizadas. Um maior número de espécies distintas com menor proximidade taxonômica durante a estação seca, em contraste com um alto número de indivíduos observados na estação chuvosa, indica que existe uma maior gama de possíveis serviços ecossistêmicos oferecidos pelas aves frugívoras no período mais seco do ano, enquanto no período de maior pluviosidade os ecossistemas apresentaram maior capacidade suporte.

Hummingbird (Aves: Trochilidae) assemblage using resources from the exotic African tuliptree, Spathodea campanulata (Bignoniaceae) in a Neotropical altered environment, southeastern Brazil / Assembleia de beija-flores (Aves: Trochilidae) utilizando recursos da árvore exótica tulipa africana, Spathodea campanulata (Bignoniaceae) em um ambiente Neotropical alterado, sudeste do Brasil

Abstract The non-native African tuliptree, Spathodea campanulata (P. Beauv), is widely distributed in altered Neotropical environments, where hummingbirds are important pollinators. We investigated the assemblage of hummingbirds which fed on its nectar and described their behavior, to understand possible influences of the exotic tree on the territorial behavior in an altered environment in southeastern Brazil. Seven species fed on flower resources, mainly Eupetomena macroura (Gmelin, 1788), Amazilia lactea (Lesson, 1832), and Florisuga fusca (Vieillot, 1817). Visiting time was positive correlated with number of flowers accessed, but in most visits, hummingbirds get the nectar by pillage, instead of frontal access. Flower availability varied throughout months; however, we found no evidence of significative correlation between available flowers and number of agonistic encounters. Despite a high number of animal-plant interactions and a strong territorialism of some species observed in African tuliptree foraging site, there may be other plants at local scale influencing the behavioral patterns observed.

Resumo A tulipa africana, Spathodea campanulata (P. Beauv), é uma árvore não nativa amplamente distribuída em ambientes Neotropicais alterados, onde os beija-flores são importantes polinizadores. Investigamos a assembleia de beija-flores que se alimentam do néctar e descrevemos seus comportamentos para compreender possíveis influências da árvore exótica sobre o comportamento territorial em um ambiente alterado no sudeste do Brasil. Sete espécies se alimentaram de recursos florais, principalmente Eupetomena macroura (Gmelin, 1788), Amazilia lactea (Lesson, 1832) e Florisuga fusca (Vieillot, 1817). O tempo de visita foi correlacionado positivamente com o número de flores acessadas, mas na maioria das visitas os beija-flores obtiveram o néctar pela pilhagem, em vez do acesso frontal. A disponibilidade de flores variou ao longo dos meses; no entanto, não encontramos evidências de correlação significativa entre flores disponíveis e número de encontros agonísticos. Apesar do grande número de interações entre plantas e animais e um forte territorialismo de algumas espécies observadas no local de forrageamento, pode haver outras plantas em escala local influenciando os padrões comportamentais observados.

Brasilia tapaculo (Scytalopus novacapitalis) seasonality and site occupancy in altitudinal riparian environments after non-natural burnings and feral pig invasion in Serra da Canastra National Park, Brazil / Sazonalidade do Tapaculo-de-Brasília (Scytalopus novacapitalis) e ocupação de área em ambientes ripários de altitude após queimadas não naturais e invasão por javaporco no Parque Nacional da Serra da Canastra, Brasil

The Brasilia Tapaculo, Scytalopus novacapitalis Sick, 1958, is a rare, geographically restricted, and endangered bird species that inhabits riparian vegetation of Cerrado, mainly Gallery Forests. In Serra da Canastra National Park, southeastern Brazil, wetlands are under threat due to frequent non-natural burnings and invasion by feral pigs, Sus scrofa, Linnaeus, 1758. We aimed to evaluate the possible effects of seasonal variations on S. novacapitalis records in undisturbed habitats and answer questions about how fire and feral pigs may affect site occupancy of the species. Transects alongside riparian environments were used to survey n=21 sites, totalizing 7.5 Km, from 2014 to 2019. Results indicated the season influenced both, spontaneous records and induced encounters by playback method, which were more abundant in breeding period, from early spring to summer. The use of playback significantly increased the amount of records in all seasons. The probability of site occupancy in all studied area was higher in late spring (ψ=0.91) and lower in autumn (ψ=0.73). In burned sites (n=8), the first post-fire month showed the lowest probability of occupancy, but there was a rapid recovery in 2nd month and stabilization similar to control area from the 3rd month ahead. After sites (n=11) were invaded by feral pigs, the estimation of site occupancy indicated a slight drop in first two months, but after the 3rd month of invasion the decreasing pattern enhanced the discrepancy with undisturbed areas. It is important to keep monitoring S. novacapitalis population and their threats, to subsidize management actions, especially to avoid frequently unusual burnings in riparian forests, and to block the access of feral pigs to wetlands.

O tapaculo-de-Brasília, Scytalopus novacapitalis, Sick 1958, é uma espécie de ave rara, geograficamente restrita e ameaçada de extinção que habita vegetação ripária do Cerrado, principalmente matas de galeria. No Parque Nacional da Serra da Canastra, sudeste do Brasil, áreas úmidas estão ameaçadas devido a frequentes queimadas não naturais e a invasão por javaporco, Sus scrofa Linnaeus, 1758. Avaliamos os possíveis efeitos da sazonalidade na quantidade de registros de S. novacapitalis em habitats sem perturbação e buscamos responder questões sobre como o fogo e a invasão por javaporco pode afetar a ocupação de área pela ave. Transecções paralelas aos ambientes ripários foram usadas para amostrar n=21 áreas, totalizando 7,5 km, de 2014 a 2019. Os resultados indicaram que a estação do ano influenciou na quantidade de registros espontâneos e de registros induzidos por playback, os quais foram mais abundantes durante o período reprodutivo. O uso de playback aumentou significativamente a quantidade de registros em todas as estações. A probabilidade de ocupação considerando toda área de estudo foi maior no fim da primavera (ψ=0,91) e menor no outono (ψ=0,73). Em áreas queimadas (n=8 trechos), o primeiro mês após o fogo apresentou a menor probabilidade de ocupação, mas houve uma rápida recuperação no 2º mês, e estabilização similar na área controle a partir do 3º mês. Após n=11 trechos terem sido invadidos por javaporcos, a estimativa de ocupação de área indicou pequena queda nos dois primeiros meses, mas a partir do 3º mês, o padrão de decréscimo ampliou a discrepância com áreas não perturbadas. É importante continuar monitorando a população de S. novacapitalis e suas ameaças, para subsidiar ações de manejo, principalmente para evitar queimadas não naturais frequentes nas florestas ripárias e bloquear o acesso de javaporcos às áreas úmidas.

Hummingbird (Aves: Trochilidae) assemblage using resources from the exotic African tuliptree, Spathodea campanulata (Bignoniaceae) in a Neotropical altered environment, southeastern Brazil

Abstract The non-native African tuliptree, Spathodea campanulata (P. Beauv), is widely distributed in altered Neotropical environments, where hummingbirds are important pollinators. We investigated the assemblage of hummingbirds which fed on its nectar and described their behavior, to understand possible influences of the exotic tree on the territorial behavior in an altered environment in southeastern Brazil. Seven species fed on flower resources, mainly Eupetomena macroura (Gmelin, 1788), Amazilia lactea (Lesson, 1832), and Florisuga fusca (Vieillot, 1817). Visiting time was positive correlated with number of flowers accessed, but in most visits, hummingbirds get the nectar by pillage, instead of frontal access. Flower availability varied throughout months; however, we found no evidence of significative correlation between available flowers and number of agonistic encounters. Despite a high number of animal-plant interactions and a strong territorialism of some species observed in African tuliptree foraging site, there may be other plants at local scale influencing the behavioral patterns observed.

Resumo A tulipa africana, Spathodea campanulata (P. Beauv), é uma árvore não nativa amplamente distribuída em ambientes Neotropicais alterados, onde os beija-flores são importantes polinizadores. Investigamos a assembleia de beija-flores que se alimentam do néctar e descrevemos seus comportamentos para compreender possíveis influências da árvore exótica sobre o comportamento territorial em um ambiente alterado no sudeste do Brasil. Sete espécies se alimentaram de recursos florais, principalmente Eupetomena macroura (Gmelin, 1788), Amazilia lactea (Lesson, 1832) e Florisuga fusca (Vieillot, 1817). O tempo de visita foi correlacionado positivamente com o número de flores acessadas, mas na maioria das visitas os beija-flores obtiveram o néctar pela pilhagem, em vez do acesso frontal. A disponibilidade de flores variou ao longo dos meses; no entanto, não encontramos evidências de correlação significativa entre flores disponíveis e número de encontros agonísticos. Apesar do grande número de interações entre plantas e animais e um forte territorialismo de algumas espécies observadas no local de forrageamento, pode haver outras plantas em escala local influenciando os padrões comportamentais observados.

Brasilia tapaculo (Scytalopus novacapitalis) seasonality and site occupancy in altitudinal riparian environments after non-natural burnings and feral pig invasion in Serra da Canastra National Park, Brazil

Abstract The Brasilia Tapaculo, Scytalopus novacapitalis Sick, 1958, is a rare, geographically restricted, and endangered bird species that inhabits riparian vegetation of Cerrado, mainly Gallery Forests. In Serra da Canastra National Park, southeastern Brazil, wetlands are under threat due to frequent non-natural burnings and invasion by feral pigs, Sus scrofa, Linnaeus, 1758. We aimed to evaluate the possible effects of seasonal variations on S. novacapitalis records in undisturbed habitats and answer questions about how fire and feral pigs may affect site occupancy of the species. Transects alongside riparian environments were used to survey n=21 sites, totalizing 7.5 Km, from 2014 to 2019. Results indicated the season influenced both, spontaneous records and induced encounters by playback method, which were more abundant in breeding period, from early spring to summer. The use of playback significantly increased the amount of records in all seasons. The probability of site occupancy in all studied area was higher in late spring (=0.91) and lower in autumn (=0.73). In burned sites (n=8), the first post-fire month showed the lowest probability of occupancy, but there was a rapid recovery in 2nd month and stabilization similar to control area from the 3rd month ahead. After sites (n=11) were invaded by feral pigs, the estimation of site occupancy indicated a slight drop in first two months, but after the 3rd month of invasion the decreasing pattern enhanced the discrepancy with undisturbed areas. It is important to keep monitoring S. novacapitalis population and their threats, to subsidize management actions, especially to avoid frequently unusual burnings in riparian forests, and to block the access of feral pigs to wetlands.

Resumo O tapaculo-de-Brasília, Scytalopus novacapitalis, Sick 1958, é uma espécie de ave rara, geograficamente restrita e ameaçada de extinção que habita vegetação ripária do Cerrado, principalmente matas de galeria. No Parque Nacional da Serra da Canastra, sudeste do Brasil, áreas úmidas estão ameaçadas devido a frequentes queimadas não naturais e a invasão por javaporco, Sus scrofa Linnaeus, 1758. Avaliamos os possíveis efeitos da sazonalidade na quantidade de registros de S. novacapitalis em habitats sem perturbação e buscamos responder questões sobre como o fogo e a invasão por javaporco pode afetar a ocupação de área pela ave. Transecções paralelas aos ambientes ripários foram usadas para amostrar n=21 áreas, totalizando 7,5 km, de 2014 a 2019. Os resultados indicaram que a estação do ano influenciou na quantidade de registros espontâneos e de registros induzidos por playback, os quais foram mais abundantes durante o período reprodutivo. O uso de playback aumentou significativamente a quantidade de registros em todas as estações. A probabilidade de ocupação considerando toda área de estudo foi maior no fim da primavera (=0,91) e menor no outono (=0,73). Em áreas queimadas (n=8 trechos), o primeiro mês após o fogo apresentou a menor probabilidade de ocupação, mas houve uma rápida recuperação no 2º mês, e estabilização similar na área controle a partir do 3º mês. Após n=11 trechos terem sido invadidos por javaporcos, a estimativa de ocupação de área indicou pequena queda nos dois primeiros meses, mas a partir do 3º mês, o padrão de decréscimo ampliou a discrepância com áreas não perturbadas. É importante continuar monitorando a população de S. novacapitalis e suas ameaças, para subsidiar ações de manejo, principalmente para evitar queimadas não naturais frequentes nas florestas ripárias e bloquear o acesso de javaporcos às áreas úmidas.

Seed-dispersing bird assemblages in riparian environments of a partially urbanized river basin, Southeastern Brazil

Abstract Birds play a key role in ecosystem dynamics, including urban and rural areas, bringing environmental quality improvements and ecological stability. Species contribute directly to natural regeneration of vegetation and succession processes, by offering ecosystem services as seed dispersal, an important role in human-modified areas. We studied the assemblages of fruit-eating birds in riparian environments of Monjolinho basin, central São Paulo state, southeastern Brazil. Birds were recorded in 41 points distributed in riparian ecosystems alongside waterbodies, in landscapes with five types of surrounding matrices: urban, periurban, farmland, and native vegetation. We described how assemblages are structured aiming to evaluate the possible influence of seasonality and landscape type. We recorded 39 bird species that can play a role as seed-dispersers, 32 in wet season and 32 in dry season. There were no significant differences in the diversity and dominance of species between seasons considering the entire area, indicating stability of basic assemblage structure. However, total number of individuals of all species recorded in different landscapes were influenced by seasonality. Also, the composition and abundance of species significantly changed between seasons, leading to a high dissimilarity with almost 50% of the species contributing with almost 90% of the observed variation. A higher taxonomic diversity and distinctness pointed to a wider array of possible seed dispersal services in natural areas, while the lowest values of indexes were found in human-modified areas. The higher number of non-related bird species during dry season contrasted with the higher number of individuals during wet season, indicating that there is more possible ecosystem services offered by frugivorous birds in driest period of the year, while in the rainy period the carrying capacity of the riparian environments was increased.

Resumo As aves desempenham um papel chave na dinâmica dos ecossistemas, incluindo áreas urbanas e rurais, e trazem melhorias na qualidade ambiental e estabilidade ecológica. As espécies contribuem diretamente com a regeneração natural da vegetação e processos de sucessão por oferecerem serviços ecossistêmicos como a dispersão de sementes, um papel fundamental em áreas alteradas. Nós estudamos a assembleia de espécies de aves que se alimentam de frutos em ambientes ripários da bacia do rio Monjolinho, região central do estado de São Paulo, sudeste do Brasil. As aves foram registradas em 41 pontos distribuídos em ecossistemas ripários ao longo dos corpos dágua, em paisagens com quatro tipos de matrizes em seu entorno: urbana, periurbana, rural e vegetação nativa. Nós descrevemos como as assembleias estão estruturadas, objetivando avaliar a possível influência da sazonalidade e do tipo de paisagem do entorno. Foram registradas 39 espécies de aves que podem desempenhar o papel de dispersoras de sementes, sendo 32 espécies no período chuvoso e 32 no período seco. Não foi detectada diferença significativa na diversidade e dominância de espécies entre estações em toda área de estudo, indicando estabilidade da estrutura básica das assembleias. Entretanto, o número total de indivíduos de todas as espécies registrados nas diferentes paisagens foi influenciado pela sazonalidade. Além disso, a composição e abundância de espécies mudou significativamente entre as estações, levando a uma alta dissimilaridade com quase 50% das espécies contribuindo com quase 90% da variação observada. A diversidade e distinção taxonômicas mais altas apontam para maior variedade de serviços ecossistêmicos possíveis relacionados à dispersão de sementes em áreas naturais, enquanto os menores valores desses índices foram encontrados em áreas antropizadas. Um maior número de espécies distintas com menor proximidade taxonômica durante a estação seca, em contraste com um alto número de indivíduos observados na estação chuvosa, indica que existe uma maior gama de possíveis serviços ecossistêmicos oferecidos pelas aves frugívoras no período mais seco do ano, enquanto no período de maior pluviosidade os ecossistemas apresentaram maior capacidade suporte.

Promoter region sequence differences in the A and G gamma globin genes of Brazilian sickle cell anemia patients

Fetal hemoglobin (HbF), encoded by the HBG2 and HBG1 genes, is the best-known genetic modulator of sickle cell anemia, varying dramatically in concentration in the blood of these patients. This variation is partially associated with polymorphisms located in the promoter region of the HBG2 and HBG1 genes. In order to explore known and unknown polymorphisms in these genes, the sequences of their promoter regions were screened in sickle cell anemia patients and correlated with both their HbF levels and their ƒÀS-globin haplotypes. Additionally, the sequences were compared with genes from 2 healthy groups, a reference one (N = 104) and an Afro-descendant one (N = 98), to identify polymorphisms linked to the ethnic background.The reference group was composed by healthy individuals from the general population. Four polymorphisms were identified in the promoter region of HBG2 and 8 in the promoter region of HBG1 among the studied groups. Four novel single nucleotide polymorphisms (SNP) located at positions -324, -317, -309 and -307 were identified in the reference group. A deletion located between -396 and -391 in the HBG2 promoter region and the SNP -271 C¨T in the HBG1 promoter region were associated with the Central African Republic ƒÀS-globin haplotype. In contrast, the -369 C¨G and 309 A¨G SNPs in the HBG2 promoter region were correlated to the Benin haplotype. The polymorphisms -396_-391 del HBG2, -369 SNP HBG2 and -271 SNP HBG1 correlated with HbF levels. Hence, we suggest an important role of HBG2 and HBG1 gene polymorphisms on the HbF synthesis.

Sequence change in the HS2-LCR and Gg-globin gene promoter region of sickle cell anemia patients

The fetal hemoglobin (HbF) levels and betaS-globin gene haplotypes of 125 sickle cell anemia patients from Brazil were investigated. We sequenced the Gg- and Ag-globin gene promoters and the DNase I-2 hypersensitive sites in the locus control regions (HS2-LCR) of patients with HbF level disparities as compared to their ßS haplotypes. Sixty-four (51.2 percent) patients had CAR/Ben genotype; 36 (28.8 percent) Ben/Ben; 18 (14.4 percent) CAR/CAR; 2 (1.6 percent) CAR/Atypical; 2 (1.6 percent) Ben/Cam; 1 (0.8 percent) CAR/Cam; 1 (0.8 percent) CAR/Arab-Indian, and 1 (0.8 percent) Sen/Atypical. The HS2-LCR sequence analyses demonstrated a c.-10.677G>A change in patients with the Ben haplotype and high HbF levels. The Gg gene promoter sequence analyses showed a c.-157T>C substitution shared by all patients, and a c.-222_-225del related to the Cam haplotype. These results identify new polymorphisms in the HS2-LCR and Gg-globin gene promoter. Further studies are required to determine the correlation between HbF synthesis and the clinical profile of sickle cell anemia patients.

Prevalence of hepatitis C virus (HCV) infection and HCV genotypes of hemodialysis patients in Salvador, Northeastern Brazil

Hepatitis C virus (HCV) infection has been identified as the major cause of chronic liver disease among patients on chronic hemodialysis (HD), despite the important reduction in risks obtained by testing candidate blood donors for anti-HCV antibodies and the use of recombinant erythropoietin to treat anemia. A cross-sectional study was performed to estimate the prevalence of HCV infection and genotypes among HD patients in Salvador, Northeastern Brazil. Anti-HCV seroprevalence was determined by ELISA in 1243 HD patients from all ten different dialysis centers of the city. HCV infection was confirmed by RT-PCR and genotyping was performed by restriction fragment length polymorphism. Anti-HCV seroprevalence among HD patients was 10.5 percent (95 percent CI: 8.8-12.3) (Murex anti-HCV, Abbott Murex, Chicago, IL, USA). Blood samples for qualitative HCV detection and genotyping were collected from 125/130 seropositive HD patients (96.2 percent). HCV-RNA was detected in 92/125 (73.6 percent) of the anti-HCV-positive patients. HCV genotype 1 (77.9 percent) was the most prevalent, followed by genotype 3 (10.5 percent) and genotype 2 (4.6 percent). Mixed infections of genotypes 1 and 3 were found in 7.0 percent of the total number of patients. The present results indicate a significant decrease in anti-HCV prevalence from 23.8 percent detected in a study carried out in 1994 to 10.5 percent in the present study. The HCV genotype distribution was closely similar to that observed in other hemodialysis populations in Brazil, in local candidate blood donors and in other groups at risk of transfusion-transmitted infection.

HEV, TTV and GBV-C/HGV markers in patients with acute viral hepatitis

The aim of the present study was to evaluate the prevalence of HEV, TTV and GBV-C/GBV-C/HGV in patients with acute viral hepatitis A, B and non-A-C. We evaluated sera of 94 patients from a sentinel program who had acute hepatitis A (N = 40), B (N = 42) and non-A-C (N = 12); 71 blood donors served as controls. IgM and anti-HEV IgG antibodies were detected by enzyme immunoassay using commercial kits. TTV and GBV-C/HGV were detected by nested PCR; genotyping was done by sequencing and phylogenetic analysis. Anti-HEV IgG was present in 38, 10 and 17 percent of patients with hepatitis A, B and non-A-C. Four patients with hepatitis A and 1 with non-A-C hepatitis also had anti-HEV IgM detected in serum. TTV was detected in 21 percent of patients with acute hepatitis and in 31 percent of donors. GBV-C/HGV was detected in 9 percent of patients with hepatitis, and in 10 percent of donors. We found TTV isolates of genotypes 1, 2, 3, and 4 and GBV-C/HGV isolates of genotypes 1 and 2. Mean aminotransferase levels were lower in patients who were TTV or GBV-C/HGV positive. In conclusion, the detection of anti-HEV IgM in some acute hepatitis A cases suggests co-infection with HEV and hepatitis E could be the etiology of a few cases of sporadic non-A-C hepatitis in Salvador, Brazil. TTV genotype 1, 2, 3 and 4 isolates and GBV-C/HGV genotype 1 and 2 strains are frequent in the studied population. TTV and GBV-C/HGV infection does not appear to have a role in the etiology of acute hepatitis.

Comparative study of Hepatitis C virus genotypes 1 and 3 in Salvador, Bahia

Hepatitis C virus displays a high degree of genetic mutation, with considerable heterogeneity, motivating clinical and biomolecular investigations. It is necessary to understand the effects of genotypes on the course of the disease, as well as their peculiarities at the regional level. OBJECTIVE: The study objective was to compare epidemiological, biochemical and histological aspects of hepatitis C virus genotypes 1 and 3 in Salvador, Bahia. STUDY DESIGN: Data were collected retrospectively from outpatient medical records. MATERIALS AND METHODS: 127 patients with positive anti-HCV results were selected, based on detectable RNA-HCV (RT-PCR) of genotypes 1a, 1b and 3a. RESULTS: Thirty-nine (30.7 percent) individuals were infected by subtype 1a, 45 (35.4 percent) by subtype 1b and 43 (33.9 percent) by subtype 3a. Most (73.2 percent) patients were male, with an average age of 47.8 years. The subtype 1b-infected patients had the highest average age (512 ±11.17; P=0.09). The use of illicit injected drugs was more frequent among subtype 3a infected individuals when compared with genotype 1 (6/43; 14 percent and 3/84; 3.6 percent, respectively; P=0,06). No significant differences were found for other epidemiological characteristics. Average values for GT, AST, ALT and ferritin did not differ between the groups (64, 78, 109, 276, respectively). Thyroid dysfunction occurred in 7/30 (23.3 percent) of those infected by genotype 3 (P=0.05). Cryoglobulinemia was also more frequent in this group (5/13, 38 percent, P=0.02). Most patients presented limited necro-inflammatory activity, stages 2 and 3 by the METAVIR Classification. In some cases, dissociation was noticed between inflammatory activity and fibrosis. No significant differences were found in the histopathological findings of the various genotypes. Younger patients had a significantly smaller degree of necrosis in stomatocytosis (P=0.032) and fibrosis (P=0.012). Intense parenchymatous activity and lymphoid follicles were more frequent among alcohol consumers (P=0.06 and P=0.04, respectively). CONCLUSIONS: In Bahia, genotype 3 dissemination seems to be associated with illicit drug use. The disease evolution depends on a function of complex interactions between virus and host. Age and alcohol consumption stand out as important variables in the development of cirrhosis.

ßS-Haplotypes in sickle cell anemia patients from Salvador, Bahia, Northeastern Brazil

ßS-Globin haplotypes were studied in 80 (160 ßS chromosomes) sickle cell disease patients from Salvador, Brazil, a city with a large population of African origin resulting from the slave trade from Western Africa, mainly from the Bay of Benin. Hematological and hemoglobin analyses were carried out by standard methods. The ßS-haplotypes were determined by PCR and dot-blot techniques. A total of 77 (48.1 percent) chromosomes were characterized as Central African Republic (CAR) haplotype, 73 (45.6 percent) as Benin (BEN), 1 (0.63 percent) as Senegal (SEN), and 9 (5.63 percent) as atypical (Atp). Genotype was CAR/CAR in 17 (21.3 percent) patients, BEN/BEN in 17 (21.3 percent), CAR/BEN in 37 (46.3 percent), BEN/SEN in 1 (1.25 percent), BEN/Atp in 1 (1.25 percent), CAR/Atp in 6 (7.5 percent), and Atp/Atp in 1 (1.25 percent). Hemoglobin concentrations and hematocrit values did not differ among genotype groups but were significantly higher in 25 patients presenting percent fetal hemoglobin ( percentHbF) > or = 10 percent (P = 0.002 and 0.003, respectively). The median HbF concentration was 7.54 ± 4.342 percent for the CAR/CAR genotype, 9.88 ± 3.558 percent for the BEN/BEN genotype, 8.146 ± 4.631 percent for the CAR/BEN genotype, and 4.180 ± 2.250 percent for the CAR/Atp genotype (P = 0.02), although 1 CAR/CAR individual presented an HbF concentration as high as 15 percent. In view of the ethnic and geographical origin of this population, we did not expect a Hardy-Weinberg equilibrium for CAR/CAR and BEN/BEN homozygous haplotypes and a high proportion of heterozygous CAR/BEN haplotypes since the State of Bahia historically received more slaves from Western Africa than from Central Africa

Interleukin 8 as a vaso-occlusive marker in Brazilian patients with sickle cell disease

Sickle cell disease has a worldwide distribution and is a public health problem in Brazil. Although vaso-occlusive crisis (VOC) is one of the most important clinical features of the disease, there are still several steps of its pathogenesis which are unknown. The increase of the chemotactic factor interleukin 8 (IL-8) has been reported to be involved in sickle cell disease crisis, but this has not been demonstrated conclusively. In the present study we analyzed serum IL-8 levels by ELISA and hematological parameters and hemoglobin patterns by standard techniques in 23 (21 SS and 2 SC) Brazilian patients with sickle cell syndromes during VOC caused by different inducing factors, 22 (21 SS and 1 SC) sickle cell patients out of crisis, and 11 healthy controls. Increased IL-8 levels were observed in 19 of 23 VOC patients (79.2 percent), 3 of them with more than 1,000 pg/ml. Seventeen of 22 (77.3 percent) non-crisis patients showed low IL-8 levels (less than 15 pg/ml). Healthy controls had low IL-8 levels. A significant difference in serum IL-8 levels was observed between crisis and non-crisis sickle cell patients (P<0.0001). There was no correlation between IL-8 levels and hematological data or hemoglobin patterns. High serum IL-8 levels were observed in VOC patients independently of the crisis-inducing factor. We conclude that in the studied population, IL-8 concentration may be a useful VOC marker, although the mechanism of the pathogenic process of sickle cell VOC syndromes remains unclear